IMGT, the international ImMunoGeneTics information system ® : a standardized approach for immunogenetics and immunoinformatics

Table 2 The IMGT sequence databases, sequence analysis tools and Web resources

IMGT sequence databaseshttp://imgt.cines.fr/textes/IMGTindex/databases.html [1]	IMGT sequence analysis toolshttp://imgt.cines.fr/textes/IMGTindex/tools.html [1]	IMGT Repertoirehttp://imgt.cines.fr/textes/IMGTindex/IMGTrep.html"Proteins and alleles"http://imgt.cines.fr/textes/IMGTrepertoire/Proteins/ section [2](2)
IMGT/LIGM-DBhttp://imgt.cines.fr/textes/IMGTindex/LIGM.html [7] IMGT/PRIMER-DBhttp://imgt.cines.fr/textes/IMGTindex/IMGTprimer-db.html [1] IMGT/MHC-DBhttp://imgt.cines.fr/textes/IMGTindex/MHC-DB.html [28]	IMGT/V-QUESThttp://imgt.cines.fr/textes/IMGTindex/dnaplot.html [10] IMGT/JunctionAnalysishttp://imgt.cines.fr/textes/IMGTindex/IMGTJunctionAnalysis.html [11] IMGT/Allele-Alignhttp://imgt.cines.fr/textes/IMGTindex/IMGTAllele-Align.html IMGT/PhyloGene [12] IMGT/Automat [29, 30] (1)	Alignments of alleles IG and TRhttp://imgt.cines.fr/textes/IMGTrepertoire/Proteins/#2 [3, 4] Alignments of alleles RPI [22] Protein displays IG and TRhttp://imgt.cines.fr/textes/IMGTrepertoire/Proteins/#1 [3, 4, 16, 17] Protein displays MHC [18] Protein displays RPI [16-18, 21] Tables of alleles IG and TRhttp://imgt.cines.fr/textes/IMGTrepertoire/Proteins/#3 Tables of alleles RPI [22, 24] Allotypes Isotypeshttp://imgt.cines.fr/textes/IMGTrepertoire/Proteins/#4, etc.

(1) IMGT/Automat [29, 30] is an integrated internal IMGT Java tool which automatically performs the annotation of rearranged cDNA sequences that represent the half of the IMGT/LIGM-DB content. So far 7,418 human and mouse IG and TR cDNA sequences have been automatically annotated by the IMGT/Automat tool, with annotations being as reliable and accurate as those provided by a human annotator.
(2) IMGT publications from the IMGT Repertoire "Proteins and alleles" section are available as pdf in IMGT Locus in Focus http://imgt.cines.fr/textes/IMGTindex/imgtfocus.html, in IMGT Index (see also [2]).