Immunome Research

Table 5 The table compares the performance of a decision tree derived using the C4.5 algorithm and a Random Forest, both generated with standard parameters. Ten-fold stratified cross-validation (on MTS) and validation on an independent protectivity validation set (MVS) are compared

From: Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins

	C4.5			Random Forest
	% sep	FPrate	TPrate	% sep	FPrate	TPrate
Cross-validation	70.41	0.24	0.65	83.39	0.15	0.82
Validation-set	73.64	0.26	0.73	84.27	0.15	0.83

Column abbreviations: %sep (% class separation), FPrate (False Positive rate) and TPrate (True Positive rate).

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